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ERX1262481: Illumina HiSeq 2000 sequencing; qiita_ptid_1265:10141.G.soil.T1.5.ReDay10
1 ILLUMINA (Illumina HiSeq 2000) run: 171,914 spots, 17M bases, 13.4Mb downloads

Design: Mouse Decomposition experiment on contrasting soil types
Submitted by: University of California San Diego Microbiome Initiative (University of California San Diego Microbiome Init)
Study: A Universal Microbial Clock for Estimating the Postmortem Interval Metcalf Mouse exp
show Abstracthide Abstract
Establishing the time since death and locating clandestine graves are crucial goals in many forensic investigations, but can often be a challenge because our understanding of human decomposition is very limited. Thus, forensic science currently does not fully leverage decomposition processes as physical evidence. Microbial communities are ubiquitous, crucial for decomposition, and hold great potential as a forensic tool. We show that archaeal, bacterial and microbial eukaryotic communities can be used to estimate the postmortem interval in both a laboratory-based mouse model system as well as in a human model system in the field. Additionally, we demonstrate that bodies decomposing on soil modify the soil microbial community substantially, allowing detection of a decomposing body via the soil microbial community, with forensic implications in scenarios in which bodies are buried or have been moved. Together, these results suggest that microbial communities associated with decomposition hold great promise for forensic science.
Sample: 10141.G.soil.T1.5.ReDay10; Metcalf_Mouse_DecompII
SAMEA3629455 • ERS936604 • All experiments • All runs
Organism: soil metagenome
Library:
Name: 10141.G.soil.T1.5.ReDay10
Instrument: Illumina HiSeq 2000
Strategy: OTHER
Source: METAGENOMIC
Selection: PCR
Layout: SINGLE
Construction protocol: Illumina HiSeq V4
Experiment attributes: (show all 18 attributes...) (hide...)
barcode: GATCTAATCGAG
center_name: CCME
center_project_name: Mouse_Decomp_2
experiment_center: CCME
experiment_title: Metcalf_Mouse_DecompII
linker: CA
pcr_primers: FWD:GTGCCAGCMGCCGCGGTAA; REV:GGACTACHVGGGTWTCTAAT
pool: 2
primer: GTGTGCCAGCMGCCGCGGTAA
run_center: CCME
run_date: 2/25/13
run_prefix: MouseDC2_16s_Pool2_NoIndex_L008_R1_001
samp_size: .1,g
sample_center: CCME
sequencing_meth: pyrosequencing
study_center: CCME
target_gene: 16S rRNA
target_subfragment: V4
Runs: 1 run, 171,914 spots, 17M bases, 13.4Mb
Run# of Spots# of BasesSizePublished
ERR1188992171,91417M13.4Mb2015-12-19

ID:
2112887

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